sbi.jp

• CellDesigner™ 4.3 (2013/02/01) new
• PhysioDesigner 1.0beta (2012/4/24)
• iPathways 1.2 (2011/08/30)

Upcoming Events:

• Bio IT Asia, May 28-30, Singapore
• 2nd HD physiology international symposium, June 28-29 Tokyo
• ICSB 2013 Aug 30 - Sept 3 Copenhagen, Denmark
  • Garuda Workshop Aug 29th, 2013

New Papers:

• new Makanae K, Kintaka R, Makino T, Kitano H, Moriya H., Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method., Genome Res. 2013 Feb;23(2):300-11. doi: 10.1101/gr.146662.112.
• new Adams R, Clark A, Yamaguchi A, Hanlon N, Tsorman N, Ali S, Lebedeva G, Goltsov A, Sorokin A, Akman OE, Troein C, Millar AJ, Goryanin I, Gilmore S., SBSI: An extensible distributed software infrastructure for parameter estimation in systems biology. Bioinformatics, 2013
• new (Book chapter) Ghosh S, Matsuoka Y, Asa Y, Kitano H, Bhardwaj A, Scaria V, Vashisht R, Shah A, Mondal AK, Vishnoi P, Sonal K, Jain A, Priyadarshini P, Bhattacharyya K, Kumar V, Passi A, Sharma P, Brahmachari S., Software Platform for Metabolic Network Reconstruction of Mycobacterium tuberculosis., Systems Biology of Tuberculosis, 2013, pp 21-35 ed. McFadden J, Beste DJB, Kierzek AM, 01/2013; Springer
• new Schaefer MH, Lopes TJ, Nancy Mah, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro M., Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions., PLoS Comput Biol. 01/2013; 9(1):e1002860.
• Shoemaker JE, Lopes TJ, Ghosh S, Matsuoka Y, Kawaoka Y, Kitano H., CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data., BMC Genomics. 2012 Sep 6;13(1):460. [Epub ahead of print] PMID: 22953731
  
• Shoemaker JE, Fukuyama S, Eisfeld AJ, Muramoto Y, Watanabe S, Watanabe T, Matsuoka Y, Kitano H, Kawaoka Y., Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs., BMC Syst Biol. 2012 Aug 31;6(1):117. [Epub ahead of print] PMID: 22937776
• Mizuno S, Iijima R, Ogishima S, Kikuchi M, Matsuoka Y, Ghosh S, Miyamoto T, Miyashita A, Kuwano R, Tanaka H., AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst Biol. 2012 May 30;6(1):52. [Epub ahead of print]
• van Iersel MP, Villéger AC, Czauderna T, Boyd SE, Bergmann FT, Luna A, Demir E, Sorokin A, Dogrusoz U, Matsuoka Y, Funahashi A, Aladjem MI, Mi H, Moodie SL, Kitano H, Le Novère N, Schreiber F., Software support for SBGN maps: SBGN-ML and LibSBGN, Bioinformatics (2012)

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