 First version of an SBGN language released (2008/08/23)
 The goal of SBGN is to standardise the graphical representation of essential biochemical and cellular processes. Standardising graphical notations for describing biological interactions is an important step towards the efficient communication of biological knowledge between different communities. More information on SBGN and SBGN Process Diagram Level 1 can be found here ( http://sbgn.org/)
Past workshops hosted by SBI
FCSB 2008 successfully concluded with JST/BBSRC supports (2008/2/14)
3 papers from SBI are ranked in the Top 10 download of Nature Molecular Systems Biology October 2007 (2007/12/7)
Collaboration with the University of Edinburgh's College of Science and Engineering in Scotland in systems biology field. (2006/2/13)
Press Release: English / Japanese (pdf )
ICSB = International Conference on Systems Biology
- ICSB-2009 August 30-Sept. 4,Stanford, CA, USA
- CellDesigner Tutorial on August 30th
- SBGN-5 workshop on Sept 2 & 3, Menlo Park
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Software Release:
New Papers:
- new Hase T, Tanaka H, Suzuki Y, Nakagawa S, Kitano H, 2009 Structure of Protein Interaction Networks and Their Implications on Drug Design. PLoS Comput Biol 5(10): e1000550. [doi:10.1371/journal.pcbi.1000550]
- Le Novere et al., Systems Biology Graphical Notation. Nature Biotech. 2009 [doi:10.1038/nbt1558]
- Matsuoka Y.; Ghosh S.; Kitano H. ;
Consistent design schematics for biological systems: standardization of representation in biological engineering. J. R. Soc. Interface. 2009 [ doi:10.1098/rsif.2009.0046.focus]
- Book chapter in Japanese:
Sakurada, K., Polouliakh, N., Kitano, H., 第一編 "細胞分化の多能性 • 全能性とレプログラミング" in 幹細胞の分化誘導と応用, NTS, 2009. ISBN978-4-86043-160-0
- Polouliakh N, Nock R, Nielsen F, Kitano H 2009 G-Protein Coupled
Receptor Signaling Architecture of Mammalian Immune Cells. PLoS ONE 4(1): e4189 doi:10.1371/journal.pone.0004189
- Funahashi, A.; Matsuoka, Y.; Jouraku, A.; Morohashi, M.; Kikuchi, N.; Kitano, H.; ."CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks", Proceedings of the IEEE Volume 96, Issue 8, Aug. 2008 Page(s):1254 - 1265
[doi 10.1109/JPROC.2008.925458] Abstract | Full Text: PDF (1379 KB)
- Book in Japanese 北野宏明・竹内薫, したたかな生命, ダイヤモンド社, ISBN-13: 978-4478810033
- Hiroaki Kitano, Towards a theory of biological robustness
Molecular Systems Biology 3 Article number: 137 doi:10.1038/msb4100179
Published online: 18 September 2007
- Funahashi, A, Jouraku, A, Matsuoka, Y, Kitano, H., Integration of CellDesigner and SABIO-RK, In Silico Biology 7 S1, 10 (2007)
- Kitano, H, A robustness-based approach to systems-oriented drug design,
Nature Reviews Drug Discovery 6 , 202-210 (March 2007) | doi :10.1038/nrd2195
- Murray, DB, Beckmann, M, Kitano, H., Regulation of yeast oscillatory dynamics, PNAS published February 6, 2007, 10.1073/pnas.0606677104 ( Cell Biology )
- Moriya H, Shimizu-Yoshida Y, Kitano H (2006); In vivo Robustness Analysis of Cell Division Cycle Genes in S. cerevisiae. PLoS Genet.
DOI: 10.1371/journal.pgen.0020111.
(2006/7/14 print)
- Oda, K., Kitano, H.;"A comprehensive map of the toll-like receptor signaling network", Mol Syst Biol : msb4100057. Apr. 18, 2006 (2006/04/18)
Position Available:
Researcher / Postdoctoral positions
for Systems Biology /
Developer for CellDesigner.
For details, contact info@sbi.jp
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